It seems like folks are a little hesitant to share their hidden BYOB spots... and I can understand why.
As an alternative, I am hoping everyone will be more likely to post their favorite wine lists.
A few of mine:
Caffe Umbra and Harvest for good variety (both price and geography)
Craigie Street Bistrot for French
Obviously, some of the higher-end places are outstanding - Meritage and the Federalist come to mind - but I am looking for the places where you wouldn't expect it necessarily.
That's why Les Zygomates and Vinalia are worth mention but aren't necessarily what I am looking for. Same goes for the high-end steakhouses, which I expect to provide great selection of wine.